API Reference

This section provides the Python API reference for ZarrNii, organized by module. Pages below are generated from code and docstrings using MkDocStrings.

Module	Description
zarrnii	Top-level package exports for common workflows
zarrnii.core	Core ZarrNii class and IO/transformation helpers
zarrnii.analysis	Image analysis functions (histograms, density estimation, region properties)
zarrnii.transform	Affine and displacement field transforms (AffineTransform, DisplacementTransform)
zarrnii.atlas	Atlas handling (ZarrNiiAtlas)
zarrnii.benchmark	Benchmarking API and scheduler configuration models
zarrnii.dask_utils	Dask client/scheduler utilities
zarrnii.enums	Enum definitions for image and transform types
zarrnii.plugins	Plugin APIs (hooks, plugin manager, built-in plugins)
zarrnii.destripe	Stripe-artifact removal utilities